C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119544 H3f3a-ps2-001 ENSMUSG00000081176 10090 - 16:91114189-91114599 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119544 3.730±1.39 0.448±0.00 13.073±6.84 15.357±7.81 1.961±1.13 0.742±0.31 0.688±0.40 1.061±0.69 12.378±15.77 1.725±0.41 1.043±0.38 4.401±2.79 1.110±0.54 3.906±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 632
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 595
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 649
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 457
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 649
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 649
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 649
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 508
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 592
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 464
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 601
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 568
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 444
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 556
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 243
ENST00000547971 RP11-98E6.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 470
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000604278 RP11-124D2.7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 355
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 375

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