C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 4938
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171334 Gm4938-201 ENSMUSG00000071193 10090 + 13:104918779-104919186 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastLiverOvaryPlacentaENSMUST00000171334
Transcript ID Adipose Bladder Breast Liver Ovary Placenta
ENSMUST00000171334 0.519±0.16 0.050±0.02 0.249±0.10 0.055±0.04 0.197±0.01 0.021±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 556
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 516
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 568
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 568
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 568
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 568
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 433
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 470
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 534
ENST00000443015 AC133141.1-001 processed_pseudogene Homo_sapiens 0 318
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 499
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 399
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 501
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 2e-30 135
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 351
ENST00000619270 CTD-2062A1.2-001 processed_pseudogene Homo_sapiens 0 278

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