C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8524
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186232 RP23-128A11.4-001 ENSMUSG00000101209 10090 + 9:96905507-96905885 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverMuscleOvaryPlacentaENSMUST00000186232
Transcript ID Adipose Bladder Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000186232 0.168±0.00 0.076±0.00 0.299±0.15 0.284±0.00 0.143±0.06 0.187±0.00 1.288±0.72 0.035±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 459
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 425
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 475
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 320
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 475
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 475
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 475
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 429
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 388
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 335
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 407
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 211
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 383
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 6e-37 158
ENST00000547971 RP11-98E6.1-001 processed_pseudogene Homo_sapiens 1e-28 130
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 1.00053e-42 176
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 339
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 233
ENST00000604278 RP11-124D2.7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 196
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 217
ENST00000619270 CTD-2062A1.2-001 processed_pseudogene Homo_sapiens 1.99993e-41 172

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