C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159789 H3f3a-007 ENSMUSG00000060743 10090 - 1:180803131-180813534 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000159789
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000159789 25.123±2.18 33.858±0.00 55.902±18.15 44.678±5.09 33.981±0.00 20.461±3.22 45.509±0.00 144.450±60.60 46.450±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 577
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 544
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 625
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 484
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 610
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 610
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 582
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 540
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 484
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 399
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000443015 AC133141.1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 510
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 409
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 488
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 414
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 2e-26 122
ENST00000619270 CTD-2062A1.2-001 processed_pseudogene Homo_sapiens 0 228

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