C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15220
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120730 Gm15220-001 ENSMUSG00000081840 10090 - 14:45919087-45919465 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartENSMUST00000120730
Transcript ID Adipose Brain Heart
ENSMUST00000120730 0.160±0.00 0.103±0.00 0.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086A CIL_00086A_0002 VISTA 14:45525150-46127947
CIL_0007SB CIL_0007SB_0002 VISTA 14:45643840-46245127
CIL_0008S4 CIL_0008S4_0002 VISTA 14:45717040-46320810

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 383
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 377
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 398
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 255
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 398
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 398
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 398
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 333
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 398
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 375
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 329
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 370
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 315
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 233
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 237

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