C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 48
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562726 HNRNPA1P48-002 ENSG00000224578 9606 + 16:51645756-51647132 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000562726
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000562726 3.390±0.00 4.623±0.00 0.528±0.47 1.029±0.88 1.913±1.79 1.411±0.00 1.226±1.13 0.530±0.51 2.823±0.00 2.455±0.00 3.657±2.10 2.863±1.56 2.649±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_0008AN CIL_0008AN_0001 VISTA 16:51055384-51656808
CIL_0007YA CIL_0007YA_0001 VISTA 16:51157888-51759114
CIL_0008AM CIL_0008AM_0001 VISTA 16:51226285-51827014
CIL_0008AP CIL_0008AP_0001 VISTA 16:51242814-51844190
CIL_0008AO CIL_0008AO_0001 VISTA 16:51323899-51924805
CIL_0008AR CIL_0008AR_0001 VISTA 16:51337270-51938128
CIL_0008AQ CIL_0008AQ_0001 VISTA 16:51398237-51999703
CIL_0008J6 CIL_0008J6_0001 VISTA 16:51423280-52024332
CIL_0008J7 CIL_0008J7_0001 VISTA 16:51452269-52053458
CIL_0008J5 CIL_0008J5_0001 VISTA 16:51483394-52084521
CIL_00085D CIL_00085D_0001 VISTA 16:51519686-52121020
CIL_0008J2 CIL_0008J2_0001 VISTA 16:51624376-52225776

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1888
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1373
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1321
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1286
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1271
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1256
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 1122
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 1092
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 1068
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 1035
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 1029
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 902
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 8e-40 169

Loading