C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081026 H3f3a-006 ENSMUSG00000060743 10090 - 1:180802697-180813547 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverENSMUST00000081026
Transcript ID Colon Liver
ENSMUST00000081026 27.846±0.00 13.517±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 634
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 586
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 1175
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 601
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 1291
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 856
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 651
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 595
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 460
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000443015 AC133141.1-001 processed_pseudogene Homo_sapiens 0 322
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 569
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 425
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 542
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 246
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 473
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 3e-38 161
ENST00000604278 RP11-124D2.7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 579
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 532

Loading