C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13349
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118436 Gm13349-001 ENSMUSG00000082520 10090 - 2:18338579-18338989 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungOvaryPlacentaENSMUST00000118436
Transcript ID Bladder Brain Kidney Liver Lung Ovary Placenta
ENSMUST00000118436 0.217±0.18 0.214±0.02 0.306±0.05 0.133±0.10 0.159±0.00 0.134±0.00 0.253±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096N CIL_00096N_0002 VISTA 2:17746233-18347055
CIL_000238 CIL_000238_0002 CGP 2:18055237-18392830

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 438
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 455
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 455
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 455
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 455
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 303
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 407
ENST00000443015 AC133141.1-001 processed_pseudogene Homo_sapiens 0 246
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 401
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 379
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 3e-28 128

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