C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420887 RP11-259P15.3-001 ENSG00000241473 9606 + 3:180820544-180821612 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryENST00000420887
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary
ENST00000420887 0.037±0.00 0.020±0.00 0.046±0.00 0.060±0.00 0.096±0.00 0.021±0.00 0.041±0.02 0.058±0.00 0.067±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0008UV CIL_0008UV_0001 VISTA 3:180755851-181358014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 736
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 580
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 580
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 579
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 562
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 534
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 534
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 527
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 501
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 448
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 438
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 427
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 427
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 427
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 427
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 418
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 412
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 405
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 375
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 337
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 320
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 302
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 300
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 296
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 289
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 261
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 219
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 217
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 198
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 196
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 196
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 195
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 8e-39 165
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 5e-21 106

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