C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423293 RP11-12M9.4-001 ENSG00000213857 9606 - 22:41074180-41075239 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000423293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000423293 0.275±0.00 0.211±0.00 0.061±0.00 0.217±0.00 0.270±0.14 0.213±0.00 0.125±0.08 0.100±0.00 0.042±0.00 0.282±0.00 0.078±0.00 0.143±0.00 0.092±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 689
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 689
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 628
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 623
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 623
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 590
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 579
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 514
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 512
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 472
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 472
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 459
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 424
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 394
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 394
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 394
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 394
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 392
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 392
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 372
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 370
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 364
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 357
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 353
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 348
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 348
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 333
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 333
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 326
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 309
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 307
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 307
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 292
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 292
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 292
ENSDART00000080664 protein_coding Danio_rerio 0 291
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 272
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 1.96182e-44 183
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 6e-40 169
ENSMUST00000119942 Gm11718-001 processed_pseudogene Mus_musculus 9e-24 115
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 4e-22 110

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