C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515712 ACTBP2-001 ENSG00000213763 9606 + 5:77784881-77786003 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMusclePlacentaTestisENST00000515712
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Placenta Testis
ENST00000515712 0.914±0.00 0.150±0.10 0.748±0.00 0.546±0.00 0.209±0.00 0.352±0.00 0.566±0.00 0.292±0.00 0.127±0.07 0.583±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_00091D CIL_00091D_0001 VISTA 5:77671560-78273382
CIL_0007OX CIL_0007OX_0002 UCNEbase 5:77741346-78218792

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1341
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1171
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1171
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1171
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1129
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1120
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1120
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1068
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1068
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1064
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 941
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 913
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 913
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 905
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 898
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 889
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 883
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 883
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 883
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 883
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 856
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 850
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 845
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 841
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 841
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 795
ENSDART00000080664 protein_coding Danio_rerio 0 793
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 741
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 726
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 725
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 710
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 701
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 684
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 649
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 625
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 619
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 542
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 536
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 438
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 436
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 409
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 383
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 383
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 377
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 313
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 289
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 246
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 217
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 7.00649e-45 185
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 1.96182e-44 183

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