C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417657 LA16c-3G11.7-001 ENSG00000241838 9606 + 22:15721486-15722608 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000417657
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000417657 0.038±0.00 0.104±0.00 0.072±0.00 0.023±0.00 0.063±0.00 0.019±0.00 0.044±0.00 0.037±0.00 0.062±0.00 0.018±0.00 0.197±0.17 2.819±2.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1312
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1182
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1182
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1171
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1120
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1068
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1024
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1022
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 974
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 924
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 907
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 891
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 883
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 883
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 878
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 878
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 878
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 878
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 850
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 833
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 833
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 822
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 800
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 769
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 749
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 743
ENSDART00000080664 protein_coding Danio_rerio 0 741
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 737
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 726
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 675
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 643
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 518
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 470
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 414
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 399
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 387
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 375
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 372
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 305
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 213
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 4.99997e-41 172
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 3e-38 163
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 3e-19 100

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