C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436287 ACTBP11-001 ENSG00000188460 9606 - 1:223863726-223864851 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000436287
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000436287 0.266±0.00 0.293±0.00 0.169±0.00 0.323±0.00 0.169±0.12 0.037±0.00 0.044±0.00 0.019±0.00 0.083±0.00 0.140±0.00 0.097±0.00 0.103±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1201
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1057
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1057
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1057
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1009
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 989
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 989
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 950
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 942
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 876
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 867
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 819
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 819
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 819
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 819
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 811
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 809
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 795
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 756
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 756
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 739
ENSDART00000080664 protein_coding Danio_rerio 0 710
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 652
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 647
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 623
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 560
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 525
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 424
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 424
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 398
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 392
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 390
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 324
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 318
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 318
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 318
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 294
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 220
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 211
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 7.00649e-45 185

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