C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A, pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475267 H3F3AP5-001 ENSG00000226881 9606 + X:50905438-50905866 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMusclePlacentaTestisENST00000475267
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000475267 0.041±0.00 0.169±0.00 0.092±0.00 0.044±0.00 0.123±0.00 0.039±0.00 0.218±0.00 0.039±0.00 0.037±0.00 0.107±0.00 0.348±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 590
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 590
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 573
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 569
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 512
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 510
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 499
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 451
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 396
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 230
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 226
ENSDART00000123081 si:ch211-113a14.14-204 protein_coding Danio_rerio 0 226
ENSDART00000115062 si:ch211-113a14.14-201 protein_coding Danio_rerio 0 222
ENSDART00000126541 si:ch211-113a14.14-202 protein_coding Danio_rerio 0 211
ENSDART00000129254 si:ch211-113a14.14-203 protein_coding Danio_rerio 0 200
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 3e-40 169

Loading