C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159441 H3f3a-005 ENSMUSG00000060743 10090 - 1:180809748-180813603 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000159441
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000159441 68.427±6.17 106.613±4.11 120.482±33.36 75.291±0.00 40.498±5.41 75.855±40.31 170.759±64.41 84.508±13.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 451
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 418
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 484
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 678
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 684
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 603
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 457
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 414
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 296
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 418
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 396
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 387
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 3e-29 132
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 7.00005e-41 171
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 228

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