C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high-mobility group high mobility group box 1, pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173370 Hmgb1-ps7-001 ENSMUSG00000092281 10090 + 7:42020836-42021483 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000173370
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000173370 0.033±0.01 0.100±0.07 0.080±0.00 0.143±0.21 0.058±0.00 0.371±0.26 0.074±0.08 0.057±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 843
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 643
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 876
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 876
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 713
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 643
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 876
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 876
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 689
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 702
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 412
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 464
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 673
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 660
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 617
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 228
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 763
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 244
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 833
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 1.96182e-44 182
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 669

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