C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394133 RP11-624L12.1-001 ENSG00000213432 9606 - 10:93284004-93284558 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394133
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394133 0.127±0.00 0.371±0.00 0.136±0.00 0.104±0.00 0.390±0.00 0.025±0.00 0.161±0.00 0.072±0.00 0.447±0.00 0.047±0.00 0.122±0.04 0.060±0.00 0.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZY CIL_0000ZY_0001 CGP 10:93073475-93482317

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 630
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 608
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 392
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 320

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