C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13666
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120032 Gm13666-001 ENSMUSG00000083569 10090 + 2:73131745-73132543 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000120032
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000120032 0.092±0.05 0.169±0.00 0.160±0.09 0.169±0.06 0.042±0.00 0.097±0.05 0.087±0.05 0.137±0.07 0.084±0.00 0.431±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0002 UCNEbase 2:72378722-73287933
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0004JE CIL_0004JE_0002 CGP 2:73092801-73284706

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315731 RPL7A-005 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000323345 RPL7A-009 protein_coding Homo_sapiens 0 824
ENST00000401715 RP3-486D24.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000413552 AC003080.4-001 processed_pseudogene Homo_sapiens 0 481
ENST00000417617 AC004129.9-001 processed_pseudogene Homo_sapiens 0 532
ENST00000423357 RPL7AP25-001 processed_pseudogene Homo_sapiens 0 243
ENST00000424041 RPL7AP14-001 processed_pseudogene Homo_sapiens 0 664
ENST00000425027 RP11-55K22.2-001 transcribed_processed_pseudogene Homo_sapiens 0 532
ENST00000426573 RP4-738P11.4-001 processed_pseudogene Homo_sapiens 0 416
ENST00000426651 RPL7A-004 protein_coding Homo_sapiens 0 499
ENST00000428027 RP11-534L20.4-001 processed_pseudogene Homo_sapiens 0 715
ENST00000429766 AC073900.4-001 processed_pseudogene Homo_sapiens 0 501
ENST00000434317 RP11-577H5.1-001 processed_pseudogene Homo_sapiens 0 617
ENST00000441433 RPL7AP38-001 processed_pseudogene Homo_sapiens 0 571
ENST00000449688 RP4-738P11.3-001 processed_pseudogene Homo_sapiens 0 364
ENST00000451120 RPL7AP71-001 processed_pseudogene Homo_sapiens 0 281
ENST00000452821 RP11-170M17.2-001 processed_pseudogene Homo_sapiens 0 719
ENST00000453064 RP11-467H10.1-001 processed_pseudogene Homo_sapiens 0 617
ENST00000463740 RPL7A-001 processed_transcript Homo_sapiens 0 505
ENST00000468019 RPL7A-003 processed_transcript Homo_sapiens 0 821
ENST00000469026 RPL7AP60-001 processed_pseudogene Homo_sapiens 0 712
ENST00000473054 RP11-204K16.1-001 processed_pseudogene Homo_sapiens 0 697
ENST00000473913 RP11-463O9.1-001 processed_pseudogene Homo_sapiens 0 689
ENST00000477943 RPL7AP6-001 processed_pseudogene Homo_sapiens 0 785
ENST00000482859 RPL7AP30-001 processed_pseudogene Homo_sapiens 0 752
ENST00000485706 RPL7A-006 processed_transcript Homo_sapiens 0 416
ENST00000486157 RP11-342F17.2-001 processed_pseudogene Homo_sapiens 0 590
ENST00000488538 RPL7AP26-001 processed_pseudogene Homo_sapiens 0 636
ENST00000496554 RPL7A-002 processed_transcript Homo_sapiens 0 580
ENST00000496790 FAM185A-005 processed_transcript Homo_sapiens 0 226
ENST00000497325 CTD-2270N23.1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000574864 RP11-55K22.2-002 processed_transcript Homo_sapiens 0 532
ENST00000588490 RPL7AP66-001 processed_pseudogene Homo_sapiens 0 791

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