C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 51
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000605218 RPL17P51-001 ENSG00000271429 9606 - 13:40224625-40224862 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000605218
Transcript ID Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000605218 0.062±0.00 0.121±0.00 0.057±0.00 0.053±0.00 0.060±0.00 1.724±1.46 0.052±0.00 0.343±0.00 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087B CIL_00087B_0001 VISTA 13:40179165-40780133

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 5e-40 167
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 5e-40 167
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 5e-40 167
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 5e-40 167
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 2e-38 161
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 2e-38 161
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 2e-38 161
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 8e-38 159
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 1e-36 156
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 1e-36 156
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 5e-35 150
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 2e-34 148
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 2e-34 148
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 2e-33 145
ENSMUST00000117623 Gm12469-001 processed_pseudogene Mus_musculus 3e-32 141
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 4e-31 137
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 1e-30 135
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 5e-30 134
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 2e-28 128
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 4e-26 121
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 2e-23 111
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 4e-21 104
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 6e-19 97
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 2e-18 95
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 2e-18 95
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 2e-18 95
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0.0000000000002 79

Loading