C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498256 RPL17P33-001 ENSG00000243844 9606 + 8:29632091-29632644 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000498256
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000498256 0.049±0.00 0.025±0.00 0.048±0.00 0.045±0.00 0.044±0.00 0.122±0.00 0.065±0.00 0.112±0.00 0.107±0.00 0.066±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 527
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 479
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 435
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000178259 1600029O15Rik-001 transcribed_processed_pseudogene Mus_musculus 0 409
ENSMUST00000179787 1600029O15Rik-002 processed_transcript Mus_musculus 0 409
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 298
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000117623 Gm12469-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 0 209

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