C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000596405 CTD-2550O8.7-001 ENSG00000268884 9606 + 19:8346517-8347687 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000596405
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000596405 0.101±0.00 0.356±0.00 0.248±0.00 0.101±0.00 0.113±0.00 0.019±0.00 0.143±0.00 0.141±0.07 0.153±0.00 0.018±0.00 0.039±0.02 0.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 479
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 370
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 340
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 296
ENSMUST00000178259 1600029O15Rik-001 transcribed_processed_pseudogene Mus_musculus 0 281
ENSMUST00000179787 1600029O15Rik-002 processed_transcript Mus_musculus 0 281
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 272
ENSMUST00000190883 RP24-119I6.4-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 2.00386e-43 180
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0.000000000002 77
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0.000000000002 77

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