C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461464 RPL17P20-001 ENSG00000241250 9606 + 4:56710060-56710614 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000461464
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000461464 0.548±0.00 1.624±0.00 0.229±0.00 0.618±0.00 0.902±0.00 0.046±0.00 0.599±0.00 0.133±0.00 0.723±0.00 0.111±0.00 0.692±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 549
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 435
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 375
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 353
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000118406 Gm15002-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 226
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 7e-37 158

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