C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446498 RP3-476K8.4-001 ENSG00000223583 9606 - 1:26454653-26455187 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000446498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000446498 0.074±0.00 0.586±0.00 1.503±0.00 0.026±0.00 0.558±0.23 0.141±0.00 0.063±0.01 0.357±0.10 0.335±0.24 0.140±0.00 0.045±0.00 0.161±0.02 0.121±0.00 0.302±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 623
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 612
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 486
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000178259 1600029O15Rik-001 transcribed_processed_pseudogene Mus_musculus 0 398
ENSMUST00000179787 1600029O15Rik-002 processed_transcript Mus_musculus 0 398
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 398
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000118406 Gm15002-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 8.99998e-41 171

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