C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396131 RPL17P50-001 ENSG00000213700 9606 - 10:73005833-73006595 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396131
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396131 0.143±0.00 0.500±0.00 0.237±0.00 0.580±0.33 1.057±0.72 0.926±0.00 0.505±0.19 0.247±0.18 0.617±0.24 0.831±0.00 0.501±0.44 0.343±0.17 0.504±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QA CIL_0008QA_0001 VISTA 10:72591086-73192639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 571
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 451
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 372
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 344
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 246
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000119087 Gm13013-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 5.00264e-43 178

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