C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404330 RPL17P25-001 ENSG00000219547 9606 - 6:80374015-80374569 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleENST00000404330
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle
ENST00000404330 0.098±0.00 0.588±0.00 0.292±0.19 0.048±0.00 0.802±0.73 0.091±0.07 0.024±0.00 0.605±0.58 0.858±0.66 0.043±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 593
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 571
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000164064 Gm6133-201 protein_coding Mus_musculus 0 475
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000117390 Gm15661-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000145241 Gm16259-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000155351 Ndfip2-002 retained_intron Mus_musculus 0 420
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 381
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000178259 1600029O15Rik-001 transcribed_processed_pseudogene Mus_musculus 0 359
ENSMUST00000179787 1600029O15Rik-002 processed_transcript Mus_musculus 0 359
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 274
ENSMUST00000166666 Gm17212-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000118691 Gm11199-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 6e-38 161

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