C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447155 HMGB1P16-001 ENSG00000229384 9606 + X:36211096-36211635 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLungENST00000447155
Transcript ID Adipose Adrenal Brain Heart Lung
ENST00000447155 0.021±0.00 0.022±0.00 0.022±0.00 0.020±0.00 0.021±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 540
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 536
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 534
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 534
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 529
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 496
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 479
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 399
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 340
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 318
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 193

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