C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5368
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189012 RP23-338I1.1-001 ENSMUSG00000102075 10090 + 9:88145969-88146554 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000189012
Transcript ID Placenta
ENSMUST00000189012 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_00066W CIL_00066W_0002 CGP 9:87702800-88372092
CIL_0008Z8 CIL_0008Z8_0002 VISTA 9:87730648-88334977
CIL_0007RZ CIL_0007RZ_0002 VISTA 9:87748577-88350948
CIL_0007TJ CIL_0007TJ_0002 VISTA 9:87770457-88374527
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 2.00386e-43 180
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 7.00649e-43 180
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 1.99965e-42 180
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 7e-37 158
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 5.00264e-43 180
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 3.9937e-43 180
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 1.00053e-42 180
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 307
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 318
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 230
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0.00003 53
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 296
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0.00006 53
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 278
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 1e-26 124
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 5e-39 165
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 4e-27 124
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 309

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