C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 8062
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139696 Gm8062-001 ENSMUSG00000066714 10090 + 13:73829932-73830375 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverLungOvaryPlacentaTestisENSMUST00000139696
Transcript ID Adrenal Bladder Brain Breast Heart Liver Lung Ovary Placenta Testis
ENSMUST00000139696 0.349±0.00 0.448±0.19 0.181±0.03 0.278±0.04 0.129±0.00 0.061±0.01 0.178±0.02 0.602±0.03 0.038±0.00 0.272±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 433
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 381
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 438
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 460
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 527
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 339
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 532
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 497
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 7e-36 154
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 444
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 315
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 455
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 442
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 412
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 481
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 532
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 388
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 283
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 351
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 215
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 532
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 532
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 532
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 433
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 494
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 532
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 453
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 438
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 433
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 311
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 272
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 488
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 532
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 436
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 532
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 374
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 331
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 464
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 532
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 532
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 532

Loading