C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15560
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117107 Gm15560-001 ENSMUSG00000081497 10090 - 10:7808116-7808758 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117107 0.420±0.19 0.542±0.17 0.278±0.16 0.623±0.39 0.373±0.14 0.501±0.36 0.383±0.13 0.241±0.18 0.355±0.19 0.459±0.19 0.145±0.04 1.233±0.66 0.245±0.13 0.238±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 680
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 507
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 678
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 678
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 601
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 507
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 678
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 483
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 678
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 433
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 566
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 327
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 508
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 453
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 525
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 462
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 9.80909e-45 183
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 281
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 643
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 202
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 686
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 2e-39 165
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 553

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