C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420302 RP11-215A21.2-001 ENSG00000236058 9606 - 10:118872054-118872602 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420302 0.098±0.00 0.103±0.00 0.116±0.00 0.026±0.00 0.051±0.00 0.260±0.00 0.023±0.00 0.128±0.00 0.023±0.00 0.143±0.00 0.204±0.00 0.101±0.03 0.109±0.00 0.074±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062M CIL_00062M_0001 CGP 10:118674167-119033732

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 662
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 640
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 446
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 346

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