C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407033 RPL17P26-001 ENSG00000216854 9606 + 6:56871191-56871743 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverTestisENST00000407033
Transcript ID Adipose Brain Breast Colon Kidney Liver Testis
ENST00000407033 0.024±0.00 0.025±0.00 0.099±0.00 0.070±0.00 0.025±0.00 0.044±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087X CIL_00087X_0001 VISTA 6:56568098-57176485

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 619
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 603
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 394
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 303

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