C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418987 RP11-394D2.1-001 ENSG00000237999 9606 + 9:100731240-100732355 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000418987
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000418987 0.072±0.00 0.059±0.00 0.135±0.00 0.086±0.00 0.311±0.00 0.062±0.00 0.069±0.00 0.038±0.00 0.033±0.00 0.024±0.00 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000204 CIL_000204_0001 CGP 9:100578079-101325135

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1029
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 878
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 878
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 861
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 861
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 837
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 837
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 826
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 734
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 725
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 675
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 660
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 643
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 643
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 643
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 643
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 636
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 625
ENSDART00000080664 protein_coding Danio_rerio 0 597
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 568
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 525
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 505
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 455
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 403
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 396
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 331
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 331
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 231
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 231
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 231
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 222
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 2e-40 171

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