C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha, cardiac muscle 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000080664 ENSDARG00000057911 7955 - 20:10151617-10161149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000080664
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000080664 0.385±0.18 295.611±110.12 4.145±0.00 2.790±0.00 4.309±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005II CIL_0005II_0001 CGP 20:10139337-10161149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1267
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1131
ENSMUST00000054716 Actbl2-201 protein_coding Mus_musculus 0 737
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 339
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 961
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 832
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 911
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1040
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 961
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 405
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 826
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 771
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 970
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 654
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 654
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 654
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 654
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 285
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 335
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 333
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 713
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 693
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 366
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 689
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1160
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 996
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 996
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1155
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 821
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 804
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 318
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1057
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 787
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 662
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 804
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1155
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 893
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 804
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 545
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 741
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 638
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 291
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 569
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 710
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 470
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 893
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 2.94273e-44 183
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 719
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 815
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1160
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 715
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 270
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 337
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 566
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 793
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 322
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 207
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 536
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 996
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 695
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 996
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 996
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 944
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 996
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 340
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 996

Loading