C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423464 RP11-183G22.1-001 ENSG00000234080 9606 + 1:50326131-50327007 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleTestisENST00000423464
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Testis
ENST00000423464 0.108±0.00 0.116±0.00 0.032±0.00 0.144±0.00 0.124±0.00 0.133±0.00 0.030±0.00 0.201±0.00 0.205±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063G CIL_00063G_0002 CGP 1:50048014-50423500
CIL_0008K0 CIL_0008K0_0001 VISTA 1:50240418-50841642
CIL_0008UT CIL_0008UT_0001 VISTA 1:50268874-50870617

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 859
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 857
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 824
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 804
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 795
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 773
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 760
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 730
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 721
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 612
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 595
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 595
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 370
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 8.99634e-43 178
ENSMUST00000117457 Gm11540-001 unprocessed_pseudogene Mus_musculus 2e-30 137
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-26 124

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