C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431536 RP4-706L14.2-001 ENSG00000232672 9606 - 1:77773865-77774864 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000431536
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000431536 0.192±0.00 0.211±0.00 0.120±0.00 0.138±0.00 0.084±0.00 0.074±0.00 0.132±0.00 0.092±0.00 0.143±0.00 0.175±0.00 0.103±0.00 0.050±0.00 0.038±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0001 VISTA 1:77533579-78136618
CIL_0007KB CIL_0007KB_0001 UCNEbase 1:77564480-77948632

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 977
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 839
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 839
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 830
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 830
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 826
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 822
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 754
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 754
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 721
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 701
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 682
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 673
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 654
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 632
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 630
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 627
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 627
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 627
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 627
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 603
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 592
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 592
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 586
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 580
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 573
ENSDART00000080664 protein_coding Danio_rerio 0 569
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 520
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 520
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 520
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 518
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 518
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 501
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 472
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 459
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 446
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 363
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 344
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 335
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 311
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 311
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 263
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 263
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 241
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 241
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 228
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 224
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 224
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 2e-35 154
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 8e-34 148

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