C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13379
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118053 Gm13379-001 ENSMUSG00000080846 10090 - 2:21442909-21443529 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENSMUST00000118053
Transcript ID Brain Placenta Testis
ENSMUST00000118053 0.226±0.02 0.029±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D3 CIL_0002D3_0002 CGP 2:21205724-21830547
CIL_0002D6 CIL_0002D6_0002 CGP 2:21367542-22618252

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 728
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 597
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 725
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 725
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 627
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 597
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 725
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 477
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 725
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 475
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 569
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 339
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 375
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 569
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 536
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 298
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 289
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 664
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 244
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 701
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 562

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