C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7858
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190177 RP24-229N7.1-001 ENSMUSG00000101726 10090 + 1:29930094-29930715 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverOvaryPlacentaTestisENSMUST00000190177
Transcript ID Adipose Brain Liver Ovary Placenta Testis
ENSMUST00000190177 0.076±0.00 0.027±0.01 0.116±0.00 0.038±0.00 0.040±0.00 0.152±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 647
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 483
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 640
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 640
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 538
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 483
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 640
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 431
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 640
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 422
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 520
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 302
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 473
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 412
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 510
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 438
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 259
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 621
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 5.60519e-45 185
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 634
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 3.99931e-42 174
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 555

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