C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343262 RPS2-001 ENSG00000140988 9606 - 16:1962052-1964860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343262 567.815±0.00 559.664±0.00 8.210±0.00 58.249±37.40 214.098±166.94 306.895±268.09 60.631±55.84 150.683±88.96 157.880±115.46 276.322±251.58 415.320±365.02 694.655±508.98 977.007±356.19 185.617±146.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017134 IPI fibroblast growth factor binding
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019899 IPI enzyme binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051347 IDA positive regulation of transferase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 1083
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 1077
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 1029
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 1026
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 1013
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 996
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 994
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 972
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 968
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 963
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 922
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 913
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 905
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 830
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 830
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 815
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 800
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 800
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 741
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 739
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 739
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 331
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 244
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 3e-38 163
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 1064
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 1009
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 396
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 2e-34 150

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