C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488803 RPS2P5-001 ENSG00000240342 9606 + 12:118246084-118246962 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000488803
Transcript ID Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000488803 37.077±0.00 2.358±0.86 9.153±0.44 12.035±10.52 3.425±0.34 6.824±0.00 16.902±0.00 55.225±87.40 180.791±136.21 2.956±2.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QC CIL_0001QC_0002 CGP 12:118135858-118372945
CIL_0007G7 CIL_0007G7_0002 CGP 12:118149801-118418031

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 1020
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 1020
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 1020
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 1003
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 987
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 963
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 963
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 948
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 920
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 907
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 902
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 832
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 821
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 811
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 806
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 728
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 728
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119349 Gm11524-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 335
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 239
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 2e-38 163

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