C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15750
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120970 Gm15750-001 ENSMUSG00000083921 10090 + 5:4764834-4765647 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000120970
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000120970 0.063±0.00 0.173±0.07 0.041±0.02 0.123±0.08 0.455±0.38 0.021±0.02 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EH CIL_0008EH_0002 VISTA 5:4533235-5135697
CIL_0008EJ CIL_0008EJ_0002 VISTA 5:4556663-5159895
CIL_000866 CIL_000866_0002 VISTA 5:4575240-5179650
CIL_00097Q CIL_00097Q_0002 VISTA 5:4707239-5309906
CIL_0003D6 CIL_0003D6_0002 CGP 5:4753873-5420312

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121535 mcm3-201 protein_coding Danio_rerio 0.00005 55
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 575
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 433
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 569
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 569
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 492
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 433
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 569
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 353
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 569
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 335
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 481
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 261
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 424
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 359
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 440
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 381
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 422
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 2.8026e-45 185
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 237
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 196
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 215
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 558
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 3.99931e-42 174
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 479

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