C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403258 ACTBP8-001 ENSG00000220267 9606 - 6:88275882-88276989 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403258
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403258 1.054±0.00 1.357±0.00 1.028±0.00 0.856±0.00 1.256±0.00 0.130±0.00 0.724±0.00 0.147±0.00 0.940±0.00 0.139±0.00 0.147±0.00 0.151±0.05 0.370±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BR CIL_0006BR_0002 CGP 6:88139864-88963596

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1157
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1013
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1013
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1013
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 992
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 985
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 961
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 944
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 852
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 846
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 780
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 765
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 765
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 765
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 765
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 747
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 739
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 717
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 680
ENSDART00000080664 protein_coding Danio_rerio 0 662
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 658
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000119420 Gm4918-001 processed_pseudogene Mus_musculus 0 564
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 510
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 460
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 429
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 420
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 412
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 370
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 1.00053e-42 178
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 4e-22 110

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