C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha, cardiac muscle 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000062370 actc1a-001 ENSDARG00000042535 7955 - 20:29503052-29509422 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000062370
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000062370 5.100±5.06 3856.510±1573.31 8.960±0.00 5.170±0.00 16.530±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003203 IMP endocardial cushion morphogenesis
GO:0003272 IMP endocardial cushion formation
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0036302 IMP atrioventricular canal development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1214
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1153
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 342
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 963
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1064
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 909
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1138
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1042
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 963
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 385
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 974
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1064
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 0 503
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 481
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 638
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 267
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 736
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 638
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 638
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 540
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 638
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 270
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 274
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 303
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 302
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 747
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 693
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 313
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 593
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1050
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1096
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1153
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 902
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 885
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 464
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1123
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 913
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 739
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 891
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1153
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 893
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 885
ENST00000409918 ACTG2-003 protein_coding Homo_sapiens 0 265
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 547
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 636
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 252
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 822
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 584
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 623
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 592
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 436
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 549
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 893
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 226
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 195
ENST00000442912 ACTG2-010 protein_coding Homo_sapiens 0 375
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 265
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 789
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 896
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1050
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 798
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 281
ENST00000473016 ACTG2-006 retained_intron Homo_sapiens 0 265
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 508
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 268
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 808
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 627
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 756
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 508
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 638
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 492
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 856
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 311
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 551

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