C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 9078
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119126 Gm9078-001 ENSMUSG00000081943 10090 + X:101062260-101063058 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000119126
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000119126 0.062±0.00 0.150±0.01 0.035±0.01 0.014±0.00 0.171±0.00 0.122±0.00 0.066±0.00 0.055±0.04 0.188±0.11 0.283±0.00 0.027±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000099 CIL_000099_0002 CGP X:100838648-101086020

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 717
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 579
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 713
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 713
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 654
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 579
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 713
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 483
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 713
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 460
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 584
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 562
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 346
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 392
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 542
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 455
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 538
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 540
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 213
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 224
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 305
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 673
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 224
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 684
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 2.99878e-43 178
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 604

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