C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121058 Hmgb1-ps5-001 ENSMUSG00000083822 10090 + 3:95530418-95530974 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000121058
Transcript ID Bladder Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000121058 0.069±0.00 0.183±0.13 0.163±0.00 0.187±0.00 0.227±0.29 0.107±0.00 0.183±0.01 0.195±0.15 0.060±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053K CIL_00053K_0002 CGP 3:95499286-95556403

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 723
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 619
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 728
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 728
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 678
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 619
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 728
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 507
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 728
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 496
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 610
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 584
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 405
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 446
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 553
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 501
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 556
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 586
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 200
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 357
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 684
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 244
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 688
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 617

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