C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5473
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179326 Gm5473-201 ENSMUSG00000095812 10090 + 15:63631697-63632338 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverTestisENSMUST00000179326
Transcript ID Bladder Brain Kidney Liver Testis
ENSMUST00000179326 0.004±0.00 0.024±0.01 0.065±0.00 0.021±0.00 0.227±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D7 CIL_0008D7_0002 VISTA 15:63039170-63641718
CIL_0008D6 CIL_0008D6_0002 VISTA 15:63374092-63976818
CIL_0007U4 CIL_0007U4_0002 VISTA 15:63374837-63976253

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 749
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 566
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 743
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 743
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 621
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 566
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 743
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 508
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 743
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 510
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 604
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 619
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 455
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 348
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 562
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 455
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 577
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 532
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 200
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 217
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 320
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 715
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 228
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 708
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 1.96182e-44 182
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 601

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