C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133667 Hmgb1-004 ENSMUSG00000066551 10090 - 5:149050068-149053016 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000133667
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000133667 12.337±0.06 5.830±1.31 50.456±0.00 45.608±0.00 19.282±5.55 9.123±0.00 17.101±2.39 95.557±0.00 21.691±1.84 13.069±3.23 70.477±3.15 9.020±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 442
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 651
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 460
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 651
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 392
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 460
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 462
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 405
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 460
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 340
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 394
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 3e-39 165
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 257
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 289
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 340
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 259
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 298
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 244
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 436
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 255
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 289
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 342

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