C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138553 Hmgb1-007 ENSMUSG00000066551 10090 - 5:149049824-149052377 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000138553
Transcript ID Placenta
ENSMUST00000138553 139.411±70.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 536
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 555
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 556
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 555
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 486
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 555
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 555
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 392
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 555
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 394
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 449
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 226
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 302
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 366
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 399
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 353
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 377
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 455
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 230
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 246
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 235
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 187
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 508
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 255
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 206
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 431

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