C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118415 Hmgb1-ps3-001 ENSMUSG00000081455 10090 - 11:63846183-63846818 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000118415
Transcript ID Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000118415 0.208±0.19 0.259±0.16 0.104±0.04 0.450±0.43 0.077±0.00 0.070±0.05 0.052±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 865
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 654
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 854
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 854
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 719
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 654
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 854
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 580
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 854
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 604
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 712
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 697
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 429
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 475
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 647
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 529
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 676
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 614
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 641
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 217
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 233
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 388
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 302
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 815
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 261
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 813
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 684

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