C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5518
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084171 Gm5518-201 ENSMUSG00000068466 10090 + 19:29160118-29160765 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084171
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084171 0.134±0.00 0.504±0.42 0.343±0.21 0.289±0.09 0.150±0.00 0.067±0.00 0.136±0.00 0.470±0.62 0.086±0.00 0.072±0.01 0.329±0.18 0.127±0.07 0.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NF CIL_0000NF_0002 CGP 19:29101375-29313080

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 854
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 654
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 893
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 893
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 719
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 654
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 893
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 582
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 893
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 599
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 695
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 702
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 420
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 468
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 678
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 529
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 665
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 601
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 641
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 217
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 233
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 388
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 305
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 776
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 255
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 850
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 187
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 669

Loading