C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438944 RP11-480I12.9-001 ENSG00000243113 9606 + 1:202873294-202874326 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000438944
Transcript ID Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000438944 0.322±0.09 0.792±0.00 0.058±0.00 0.271±0.10 0.130±0.00 0.316±0.00 0.021±0.00 0.235±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 385
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 385
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 368
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 368
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 361
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 333
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 315
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0 307
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 307
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 307
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 302
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 302
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 259
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 259
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 254
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 252
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 252
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 252
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 250
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 241
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 241
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 231
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 226
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 220
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 217
ENSDART00000135318 actb1-006 retained_intron Danio_rerio 0 213
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 213
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 2.99878e-43 180
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 2.99878e-43 180
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 1e-37 161
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 6e-30 135

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